CDS

Accession Number TCMCG057C24236
gbkey CDS
Protein Id XP_018491328.1
Location complement(join(10196294..10196328,10196398..10196569,10196650..10196844,10196924..10197034,10197116..10197328,10197431..10197538,10197624..10197765,10197853..10198946,10199049..10199147,10199237..10199875))
Gene LOC108861854
GeneID 108861854
Organism Raphanus sativus

Protein

Length 935aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018635826.1
Definition PREDICTED: pumilio homolog 5 isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description Pumilio-family RNA binding repeat
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
KEGG_ko ko:K17943        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005773        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006970        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009414        [VIEW IN EMBL-EBI]
GO:0009415        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009651        [VIEW IN EMBL-EBI]
GO:0009819        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009896        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031331        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043488        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050779        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061013        [VIEW IN EMBL-EBI]
GO:0061014        [VIEW IN EMBL-EBI]
GO:0061157        [VIEW IN EMBL-EBI]
GO:0061158        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1903311        [VIEW IN EMBL-EBI]
GO:1903313        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACGACGACGCAGAGCGCTATGAGGATGGTGGAAGGTGATCATTTGAAAAGTTGGCAGGGTTCCTCTAGGGATACTAGTGGGATATTTGGTTCACATGATATGGCTGTTGAAGATTTAAGGTTCCTTATGGAAAGAAACAGATTGGATAGTGGTAGTGGTGGTGGTGGTGATCATACAGGGAAGATCCCTAGTAGGAGTGGGAGCGCGCCGCCTAGCATGGAAGGTTCATTTGCAGCTCTTAGGAATCTCTTGAAACAACAGGAAGGTAGTGGTAGTAGTAGTAGCAGCTCTGATGTTTTCAGTAGGGCTATTGAGAGTTACGGCTCTGAAGAAGAGATACGTGGCGATCCTGCTTATGTAGCTTACTATTTGTCCAACATCAACTTGAATCCGAGGCTTCCTCCTCCGTTGATCTCACGTGAGAATCAGCACTTGCTGCGTCATTTGGGTGGGGTTGGTGATGGTAGTCCAACAGCATCTTGGGATGATATGGGTGTAAGATCTTCTTCCTTGCTTGCTTCTAGAACTGCGCTTTCGACACATAGAGAGGAGCCTGAGGAGGAGGCTTCTTCTGGTGAGCAACTTACTTATGCTTCTTTCCCTGCTCGTCGTAAGAGCTTTGCTGATATCATTCAGCGGCCTCATTCGGCAGGGAATCATCCAATAGCAGAAGCCATTTCTTCTGGTATAGCTCCAGAAAGCACAAGAAGAGTACCAGAGTCTGATATAAGTTCGAAAGAGAGATCAAACGCGAGGGTAGCGAGCCACCACGAGGACAACAATCTATCTGCTTTTGATGCTTCTGGTCCATCCTCTGCTGCTTCTAGAATGATGAGGAACCAAGAAGAACAGCAATCTCAGGGAAGGAGAGTACCTGTTCAATACACACCTTCATCGTATCAAGTTCAAGCTAGTTCGCCACAACAAATGACCTATCCTAGGATGGGTGGTACGCACGACATGATGCAGAACTTGCCTAGGATTGCTACTGGAGAGGTACATTCGAGTTTCCAATCTCCTCCTCATGGTTTGCCATCGCCTCATATGTATACATCATCAACAGCAGCATATATGACATCACTGAGCCCGTTTTACAATCATAACTTTCAGTCCTCTGGTATGTACCTCCCGCAGTATAATTACAGCGGTTACCACCCTCCTGTCTCTGGTGTTGTCCCTCAGTACATGAGTGGATACCCATCTCATGAAGCTACCGTTCCTATGCCGTATGACATCTCCTCGCCTTCTTCGGGATACAACAACTCCTTCTCTCGAGGATCCTTTTCACCTACTGGACAGCAGCACACTCCTTTCGTGGATCCTTTTCAGTTGCAATACTATCAACAGTCTCAAGCAGACCCGTATTCTCCTTCGTTTCAGACCAGCACTGATTCTTTTGGGCAGAAAGACCAACAAGCTGGTGGGTTTATGACCAATCAAGAACCTCAGAGCAATCAACTGAGTCCAAGTTTTGGGTTGCAAAGTCCGCGGCACATGGGAAACTACTTTGCAGTGCCGCCTGGTGTGAGAGTCATGCCGCAGTATCAGGGATCACCTCTTGCTAGTCCAGTGATGCCATCCTCACCGGTTGGTGGTGGGATGATGAGCCACTTTGGAAGACGAAGTGAAACAAGGTATCATCAACAACAAGGAGCTAGTAGAAACACAGGGATTTACCCTGGTGGATGGCAAGGGAACAGAGGAGTAGGAGGCAGCAGCAGCAGCAGCGTCGATGATTTTAAAAGACATTCTTTTCTTGATGAACTCAAGTCTCCAAACGCTCGTAAAATGGAGCTGTCTGATATCGCAGGGCGTGTTATTGAATTCAGCGTTGATCAGCATGGCAGCCGGTTTATTCAACAGAAGTTGGAGCACTGCTCTGATGAGGAGAAGGCATCTGTTTTCAGTGAGGTTCTTCCACAAGCTTCGAAATTGATGACTGACGTCTTTGGAAATTATGTTATCCAAAAATTCATAGAACATGGAACTCCAGCGCAGAGGGAAGAACTTGTGAAGCAACTTGCTGGTCAGATGGTTTCTCTAAGCTTGCAGATGTATGGATGTCGTGTGATACAAAAGGCACTTGAAGTGATAGATGTTGACCAAAAGACAGAACTGACTCGTGAGCTCGATGGGAATGTGCTGAAGTGCGTTAGAGATCAGAACGGGAATCATGTTATTCAAAAGTGTATAGAGAGTATGCCTGCCTCTAGGATTGGATTTATAATTGCAGCTTTCCGTGGTCAGGTTGCCACTCTTTCTACTCATCCTTATGGATGCCGAGTCATCCAGAGAATCTTGGAGCACTGCTCAGATGATGAGGAGACTCGTTGTATAATCGATGAAATCTTGGAGTCTGCTTTTGCTCTTGCTCATGATCAGTATGGGAATTATGTCACTCAGCATGTCCTGGAGAGAGGGAAGCCTGACGAAAGAAGACAGATTATTGAGAAGTTGACAGGGAATGTTGTTCAGATGAGTCAGCACAAATACGCGTCAAACGTTGTGGAGAAGTGTCTGGAACATGCTGATAGTACCGAGAGAGAGTTGCTGATTGAAGAGATAATGGGAAAATCCGAGGAAGACAATCACTTGCTGGCGATGATGAAAGATCAGTATGCAAATTATGTGGTCCAGAAAGTCTTGGAGATCAGTAAAGATGAGCAAAGGGAGATTCTGGTGCAGCGAATGAAAATTCATCTCGAGAGTTTGAGGAAGTACACATATGGGAAACACATAGTAGCCCGCTTCGAACAACTGTTTGGTGAAGAGAGTGAAGCTTCAGAAGGAGGAACAGAAGGTTAG
Protein:  
MTTTQSAMRMVEGDHLKSWQGSSRDTSGIFGSHDMAVEDLRFLMERNRLDSGSGGGGDHTGKIPSRSGSAPPSMEGSFAALRNLLKQQEGSGSSSSSSDVFSRAIESYGSEEEIRGDPAYVAYYLSNINLNPRLPPPLISRENQHLLRHLGGVGDGSPTASWDDMGVRSSSLLASRTALSTHREEPEEEASSGEQLTYASFPARRKSFADIIQRPHSAGNHPIAEAISSGIAPESTRRVPESDISSKERSNARVASHHEDNNLSAFDASGPSSAASRMMRNQEEQQSQGRRVPVQYTPSSYQVQASSPQQMTYPRMGGTHDMMQNLPRIATGEVHSSFQSPPHGLPSPHMYTSSTAAYMTSLSPFYNHNFQSSGMYLPQYNYSGYHPPVSGVVPQYMSGYPSHEATVPMPYDISSPSSGYNNSFSRGSFSPTGQQHTPFVDPFQLQYYQQSQADPYSPSFQTSTDSFGQKDQQAGGFMTNQEPQSNQLSPSFGLQSPRHMGNYFAVPPGVRVMPQYQGSPLASPVMPSSPVGGGMMSHFGRRSETRYHQQQGASRNTGIYPGGWQGNRGVGGSSSSSVDDFKRHSFLDELKSPNARKMELSDIAGRVIEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELTRELDGNVLKCVRDQNGNHVIQKCIESMPASRIGFIIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETRCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTERELLIEEIMGKSEEDNHLLAMMKDQYANYVVQKVLEISKDEQREILVQRMKIHLESLRKYTYGKHIVARFEQLFGEESEASEGGTEG